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Jumpponnen A., Porras-Alfaro A, Rudgers J.  2016.  Biogeography of root-associated endophytes. Biogeography of Mycorrhizal Symbiosis .
Jr. MCMolles, Dahm CN, M. Crocker T.  1992.  Climatic variability and streams and rivers in semi-arid regions. Aquatic Ecosystems in Semi-Arid Regions: Implications for Resource Management. :197-202.
Jr. RCampos-Mar, Rockwell B.  1989.  Quantitative Lithologic Mapping in Spectral Ratio Feature Space: Volcanic, Sedimentary, and Metamorphic Terrains.
Jr. MCMolles, Dahm CN.  1990.  A perspective on El Nino and La Nina: global implications for stream ecology. Journal of the North American Benthological Society. 9:68-76.
Jones JA, Creed IF, Hatcher KL, Warren RJ, Adams MBeth, Benson MH, Boose E, Brown WA, Campbell JL, Covich A et al..  2012.  Ecosystem processes and human influences regulate streamflow response to climate change at long-term ecological research sites. BioScience. 62(4):390-404.
Johnson AR, Milne BT, Wiens JA.  1992.  Diffusion in fractal landscapes: Simulations and experimental studies of Tenebrionid beetle movements. Ecology. 73:1968-1983.
Johnson NC, Rowland DL, Corkidi L, Egerton-Warburton LM, Allen EB.  2003.  Nitrogen enrichment alters mycorrhizal allocation at five mesic to semiarid grasslands. Ecology. 84:1895-1908.
Johnson AR, Wiens JA, Milne BT, Crist TO.  1992.  Animal movements and population dynamics in heterogeneous landscapes. Landscape Ecology. 7:63-75.
Johnson AR, Hatfield CA, Milne BT.  1995.  Simulated diffusion dynamics in river networks. Ecological Modelling. 83:311-325.
Jiang L, Jiang J, Liang J, Wilcox KR, Collins SL, Knapp AK, Pockman WT, Smith MD, Luo Y.  2017.  Frontiers of Ecosystem Modeling and Large-Scale Experiments. Terrestrial Ecosystem Research Infrastructures. :26.
Jackson RB, Banner JL, Jobbagy EG, Pockman WT, Wall DH.  2002.  Ecosystem carbon loss with woody plant invasion of grasslands. Nature. 418:623-626.